HCSGD entry for HOXA6
1. General information
| Official gene symbol | HOXA6 |
|---|---|
| Entrez ID | 3203 |
| Gene full name | homeobox A6 |
| Other gene symbols | HOX1 HOX1.2 HOX1B |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003700 | Sequence-specific DNA binding transcription factor activity | IEA | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0009952 | Anterior/posterior pattern specification | IEA | biological_process |
| GO:0043565 | Sequence-specific DNA binding | IEA | molecular_function |
| GO:0048704 | Embryonic skeletal system morphogenesis | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0667794499 | 0.8724755594 | 0.5562347785 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0800359136 |
| GSE13712_SHEAR | Down | -0.3282201340 |
| GSE13712_STATIC | Up | 0.1701013932 |
| GSE19018 | Up | 0.0173771343 |
| GSE19899_A1 | Up | 0.2900292497 |
| GSE19899_A2 | Down | -0.0480014419 |
| PubMed_21979375_A1 | Down | -0.1072642548 |
| PubMed_21979375_A2 | Up | 0.0455998404 |
| GSE35957 | Up | 0.1942840339 |
| GSE36640 | Down | -0.1912290535 |
| GSE54402 | Down | -0.0926451826 |
| GSE9593 | Down | -0.0589586419 |
| GSE43922 | Up | 0.0509652414 |
| GSE24585 | Up | 2.4129901582 |
| GSE37065 | Up | 0.0330404052 |
| GSE28863_A1 | Up | 0.0302992437 |
| GSE28863_A2 | Up | 0.3835687770 |
| GSE28863_A3 | Up | 0.1035408100 |
| GSE28863_A4 | Up | 0.0748596952 |
| GSE48662 | Up | 0.7278622647 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-296-3p | MIMAT0004679 | MIRT038338 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7a-5p | MIMAT0000062 | MIRT052543 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
