HCSGD entry for HIST1H2BD
1. General information
| Official gene symbol | HIST1H2BD |
|---|---|
| Entrez ID | 3017 |
| Gene full name | histone cluster 1, H2bd |
| Other gene symbols | H2B.1B H2B/b H2BFB HIRIP2 dJ221C16.6 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000786 | Nucleosome | IEA | cellular_component |
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0006334 | Nucleosome assembly | IEA | biological_process |
| GO:0046982 | Protein heterodimerization activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0005508643 | 0.9374109304 | 0.0666422018 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 3.0519706447 |
| GSE13712_SHEAR | Up | 0.9986355547 |
| GSE13712_STATIC | Up | 1.6168858025 |
| GSE19018 | Up | 0.1982188425 |
| GSE19899_A1 | Up | 1.9944713986 |
| GSE19899_A2 | Up | 1.4047852782 |
| PubMed_21979375_A1 | Up | 0.2537566007 |
| PubMed_21979375_A2 | Up | 0.5853866602 |
| GSE35957 | Up | 0.3922165983 |
| GSE36640 | Up | 0.2217555773 |
| GSE54402 | Down | -0.0873885307 |
| GSE9593 | Up | 1.1927980591 |
| GSE43922 | Down | -0.0706002773 |
| GSE24585 | Up | 0.8146308378 |
| GSE37065 | Up | 0.1103312018 |
| GSE28863_A1 | Down | -0.3700759285 |
| GSE28863_A2 | Down | -0.1691530258 |
| GSE28863_A3 | Up | 0.2022305068 |
| GSE28863_A4 | Down | -0.1805892097 |
| GSE48662 | Up | 0.9148007707 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-98-5p | MIMAT0000096 | MIRT027729 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-744-5p | MIMAT0004945 | MIRT037473 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-455-3p | MIMAT0004784 | MIRT037819 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-296-3p | MIMAT0004679 | MIRT038347 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-652-3p | MIMAT0003322 | MIRT039490 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT040221 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-378a-3p | MIMAT0000732 | MIRT043903 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-3140-3p | MIMAT0015008 | MIRT052660 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
