HCSGD entry for POMT2
1. General information
| Official gene symbol | POMT2 |
|---|---|
| Entrez ID | 29954 |
| Gene full name | protein-O-mannosyltransferase 2 |
| Other gene symbols | LGMD2N MDDGA2 MDDGB2 MDDGC2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000030 | Mannosyltransferase activity | IEA | molecular_function |
| GO:0004169 | Dolichyl-phosphate-mannose-protein mannosyltransferase activity | IEA | molecular_function |
| GO:0005789 | Endoplasmic reticulum membrane | IEA | cellular_component |
| GO:0006493 | Protein O-linked glycosylation | IEA | biological_process |
| GO:0016020 | Membrane | IEA | cellular_component |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0330648342 | 0.9906070210 | 0.4186675481 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1151386270 |
| GSE13712_SHEAR | Down | -0.0669903299 |
| GSE13712_STATIC | Up | 0.0910060948 |
| GSE19018 | Up | 0.0986108115 |
| GSE19899_A1 | Up | 0.1121987893 |
| GSE19899_A2 | Up | 0.3842143219 |
| PubMed_21979375_A1 | Up | 0.1751565651 |
| PubMed_21979375_A2 | Up | 0.6344373279 |
| GSE35957 | Up | 0.1836590949 |
| GSE36640 | Up | 0.5082245576 |
| GSE54402 | Up | 0.1847605667 |
| GSE9593 | Down | -0.0402402098 |
| GSE43922 | Up | 0.9048663557 |
| GSE24585 | Down | -0.1836989805 |
| GSE37065 | Up | 0.3336423358 |
| GSE28863_A1 | Up | 0.2115972241 |
| GSE28863_A2 | Up | 0.3156004769 |
| GSE28863_A3 | Up | 0.2222861100 |
| GSE28863_A4 | Up | 0.1108045810 |
| GSE48662 | Up | 0.1484401296 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-146b-5p | MIMAT0002809 | MIRT041610 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
