HCSGD entry for RBM15B
1. General information
| Official gene symbol | RBM15B |
|---|---|
| Entrez ID | 29890 |
| Gene full name | RNA binding motif protein 15B |
| Other gene symbols | HUMAGCGB OTT3 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000166 | Nucleotide binding | IEA | molecular_function |
| GO:0000381 | Regulation of alternative mRNA splicing, via spliceosome | IDA | biological_process |
| GO:0003723 | RNA binding | NAS | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005654 | Nucleoplasm | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006397 | MRNA processing | IEA | biological_process |
| GO:0006913 | Nucleocytoplasmic transport | IDA | biological_process |
| GO:0008380 | RNA splicing | IEA | biological_process |
| GO:0016032 | Viral process | IEA | biological_process |
| GO:0045892 | Negative regulation of transcription, DNA-templated | IDA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9642100528 | 0.0366885567 | 0.9999902473 | 0.3612717920 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1594850404 |
| GSE13712_SHEAR | Down | -0.5774117093 |
| GSE13712_STATIC | Down | -0.5000675131 |
| GSE19018 | Down | -0.1410111638 |
| GSE19899_A1 | Down | -0.1826578493 |
| GSE19899_A2 | Down | -0.3670241831 |
| PubMed_21979375_A1 | Down | -0.0901379581 |
| PubMed_21979375_A2 | Up | 0.4736144108 |
| GSE35957 | Down | -0.3664087292 |
| GSE36640 | Down | -1.2203195038 |
| GSE54402 | Up | 0.2230396034 |
| GSE9593 | Down | -0.2408980918 |
| GSE43922 | Up | 0.0352612918 |
| GSE24585 | Down | -0.2491881906 |
| GSE37065 | Down | -0.2068841996 |
| GSE28863_A1 | Up | 0.4272850534 |
| GSE28863_A2 | Up | 0.1034050064 |
| GSE28863_A3 | Down | -0.0417720055 |
| GSE28863_A4 | Down | -0.3990905540 |
| GSE48662 | Down | -0.1670244670 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-16-5p | MIMAT0000069 | MIRT031596 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-93-3p | MIMAT0004509 | MIRT038833 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT040398 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-423-3p | MIMAT0001340 | MIRT042500 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-222-3p | MIMAT0000279 | MIRT046600 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-182-5p | MIMAT0000259 | MIRT047189 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-34a-5p | MIMAT0000255 | MIRT047368 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-197-3p | MIMAT0000227 | MIRT048082 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
