HCSGD entry for SNX8
1. General information
| Official gene symbol | SNX8 |
|---|---|
| Entrez ID | 29886 |
| Gene full name | sorting nexin 8 |
| Other gene symbols | Mvp1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0006886 | Intracellular protein transport | IMP | biological_process |
| GO:0007154 | Cell communication | IEA | biological_process |
| GO:0030904 | Retromer complex | IDA | cellular_component |
| GO:0031901 | Early endosome membrane | IDA | cellular_component |
| GO:0034498 | Early endosome to Golgi transport | IMP | biological_process |
| GO:0035091 | Phosphatidylinositol binding | IEA IMP | molecular_function |
| GO:0042802 | Identical protein binding | IPI | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2136826716 | 0.9203543254 | 0.8907731391 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1155950518 |
| GSE13712_SHEAR | Up | 0.2217347897 |
| GSE13712_STATIC | Up | 0.0583052778 |
| GSE19018 | Up | 0.3258685544 |
| GSE19899_A1 | Up | 0.2290800765 |
| GSE19899_A2 | Up | 0.3179242958 |
| PubMed_21979375_A1 | Up | 0.0161864129 |
| PubMed_21979375_A2 | Up | 0.3388952937 |
| GSE35957 | Up | 0.0689734630 |
| GSE36640 | Up | 0.0601675704 |
| GSE54402 | Down | -0.0247802049 |
| GSE9593 | Up | 0.0920232879 |
| GSE43922 | - | - |
| GSE24585 | - | - |
| GSE37065 | - | - |
| GSE28863_A1 | Down | -0.2117217235 |
| GSE28863_A2 | Up | 0.2942233924 |
| GSE28863_A3 | Down | -0.0522658619 |
| GSE28863_A4 | Up | 0.0246139767 |
| GSE48662 | Down | -0.2053095895 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-423-5p | MIMAT0004748 | MIRT038133 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-107 | MIMAT0000104 | MIRT048293 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
