HCSGD entry for PARVB
1. General information
| Official gene symbol | PARVB |
|---|---|
| Entrez ID | 29780 |
| Gene full name | parvin, beta |
| Other gene symbols | CGI-56 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003779 | Actin binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0005856 | Cytoskeleton | IEA | cellular_component |
| GO:0005886 | Plasma membrane | IEA | cellular_component |
| GO:0005925 | Focal adhesion | IDA | cellular_component |
| GO:0007155 | Cell adhesion | IEA | biological_process |
| GO:0030018 | Z disc | IEA | cellular_component |
| GO:0030027 | Lamellipodium | IDA | cellular_component |
| GO:0030031 | Cell projection assembly | IMP | biological_process |
| GO:0030032 | Lamellipodium assembly | IMP | biological_process |
| GO:0031532 | Actin cytoskeleton reorganization | IEA IMP | biological_process |
| GO:0034329 | Cell junction assembly | TAS | biological_process |
| GO:0071963 | Establishment or maintenance of cell polarity regulating cell shape | IMP | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0233387751 | 0.8062430379 | 0.3627449088 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1270417933 |
| GSE13712_SHEAR | Down | -0.0848743823 |
| GSE13712_STATIC | Up | 0.0172782877 |
| GSE19018 | Up | 0.4212254798 |
| GSE19899_A1 | Up | 0.0173023698 |
| GSE19899_A2 | Up | 1.1182676945 |
| PubMed_21979375_A1 | Up | 0.6028573186 |
| PubMed_21979375_A2 | Up | 1.1959741551 |
| GSE35957 | Down | -0.6081898584 |
| GSE36640 | Down | -0.1370179110 |
| GSE54402 | Up | 0.4906667753 |
| GSE9593 | Down | -0.1851454810 |
| GSE43922 | Up | 0.2069910950 |
| GSE24585 | Down | -0.1620343088 |
| GSE37065 | Down | -0.1758601079 |
| GSE28863_A1 | Up | 0.7585380910 |
| GSE28863_A2 | Up | 0.4086893774 |
| GSE28863_A3 | Up | 0.2035887137 |
| GSE28863_A4 | Up | 0.0573963229 |
| GSE48662 | Down | -0.0290134193 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-let-7b-5p | MIMAT0000063 | MIRT032339 | Proteomics | Functional MTI (Weak) | 18668040 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
