HCSGD entry for NXT1
1. General information
| Official gene symbol | NXT1 |
|---|---|
| Entrez ID | 29107 |
| Gene full name | NTF2-like export factor 1 |
| Other gene symbols | MTR2 P15 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005643 | Nuclear pore | IEA | cellular_component |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0006405 | RNA export from nucleus | IEA | biological_process |
| GO:0006611 | Protein export from nucleus | IEA | biological_process |
| GO:0008536 | Ran GTPase binding | IEA | molecular_function |
| GO:0016607 | Nuclear speck | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1255189582 | 0.2696673189 | 0.7226858392 | 0.9928540355 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.3075593538 |
| GSE13712_SHEAR | Up | 0.1895924683 |
| GSE13712_STATIC | Up | 0.0689913092 |
| GSE19018 | Down | -0.6429700676 |
| GSE19899_A1 | Up | 0.0451025312 |
| GSE19899_A2 | Up | 0.3863460219 |
| PubMed_21979375_A1 | Up | 0.7931025680 |
| PubMed_21979375_A2 | Up | 0.3613142014 |
| GSE35957 | Down | -1.1155920367 |
| GSE36640 | Down | -1.4749704739 |
| GSE54402 | Up | 0.7459435980 |
| GSE9593 | Down | -0.4409539805 |
| GSE43922 | Up | 0.2212692184 |
| GSE24585 | Down | -0.1856282743 |
| GSE37065 | Down | -0.0546465327 |
| GSE28863_A1 | Down | -0.0925561928 |
| GSE28863_A2 | Up | 0.1786951235 |
| GSE28863_A3 | Up | 0.3833575799 |
| GSE28863_A4 | Up | 0.1351345356 |
| GSE48662 | Down | -0.3154446471 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-128-3p | MIMAT0000424 | MIRT021904 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-30a-5p | MIMAT0000087 | MIRT028425 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-331-3p | MIMAT0000760 | MIRT043373 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-320a | MIMAT0000510 | MIRT044814 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: 1 abstracts the gene occurs.
PubMed ID of the article | Sentenece the gene occurs |
|---|---|
| 23634235 | Amongst the genes were IRAK3, SelS, HSPA5, HERPUD1, DNAJB9, SEPR1, C18orf55, ARF4, RINT1, NXT1, CADPS2, COG6, and GLRX5 |
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