HCSGD entry for SSU72
1. General information
| Official gene symbol | SSU72 |
|---|---|
| Entrez ID | 29101 |
| Gene full name | SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) |
| Other gene symbols | HSPC182 PNAS-120 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0006378 | MRNA polyadenylation | IMP | biological_process |
| GO:0008420 | CTD phosphatase activity | IDA | molecular_function |
| GO:0070940 | Dephosphorylation of RNA polymerase II C-terminal domain | IDA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1643331218 | 0.9244021960 | 0.8018932332 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1654917520 |
| GSE13712_SHEAR | Up | 0.0269441491 |
| GSE13712_STATIC | Down | -0.0550676851 |
| GSE19018 | Down | -0.1090353759 |
| GSE19899_A1 | Up | 0.1597255151 |
| GSE19899_A2 | Up | 0.2219459859 |
| PubMed_21979375_A1 | Up | 0.7783296443 |
| PubMed_21979375_A2 | Down | -0.0983897820 |
| GSE35957 | Up | 0.2723349333 |
| GSE36640 | Up | 0.0327955643 |
| GSE54402 | Up | 0.4879585266 |
| GSE9593 | Up | 0.0134219436 |
| GSE43922 | Up | 0.2497787546 |
| GSE24585 | Down | -0.0924987812 |
| GSE37065 | Down | -0.1743682780 |
| GSE28863_A1 | Up | 0.0396926954 |
| GSE28863_A2 | Up | 0.1045832845 |
| GSE28863_A3 | Up | 0.1097409480 |
| GSE28863_A4 | Down | -0.0747020569 |
| GSE48662 | Up | 0.1846393654 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-7-5p | MIMAT0000252 | MIRT025930 | Microarray | Functional MTI (Weak) | 19073608 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031949 | Proteomics | Functional MTI (Weak) | 18668040 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
