HCSGD entry for RNF149
1. General information
| Official gene symbol | RNF149 |
|---|---|
| Entrez ID | 284996 |
| Gene full name | ring finger protein 149 |
| Other gene symbols | DNAPTP2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0016567 | Protein ubiquitination | IEA | biological_process |
| GO:0016874 | Ligase activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0004329357 | 0.9911416208 | 0.0558593137 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1960950083 |
| GSE13712_SHEAR | Up | 0.8872582790 |
| GSE13712_STATIC | Up | 0.9817246966 |
| GSE19018 | Up | 0.0779314717 |
| GSE19899_A1 | Up | 1.7692915842 |
| GSE19899_A2 | Up | 1.7458700602 |
| PubMed_21979375_A1 | Up | 1.6075610761 |
| PubMed_21979375_A2 | Up | 1.5603351111 |
| GSE35957 | Up | 0.0662605160 |
| GSE36640 | Up | 0.4566327050 |
| GSE54402 | Up | 1.2846188464 |
| GSE9593 | Up | 0.6140214519 |
| GSE43922 | Up | 1.4300014507 |
| GSE24585 | Down | -0.0736799908 |
| GSE37065 | Up | 0.6582525099 |
| GSE28863_A1 | Up | 0.3762953179 |
| GSE28863_A2 | Up | 0.6956682655 |
| GSE28863_A3 | Down | -0.6921233015 |
| GSE28863_A4 | Down | -0.2019384929 |
| GSE48662 | Up | 0.1370574823 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-373-3p | MIMAT0000726 | MIRT002520 | Microarray//Microarray;Other | Functional MTI (Weak) | 15685193 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031790 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT039925 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-186-5p | MIMAT0000456 | MIRT045180 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-15b-5p | MIMAT0000417 | MIRT046533 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
- mirRecord
MicroRNA name | mirBase ID | Target site number | MiRNA mature ID | Test method inter | MiRNA regulation site | Reporter target site | Pubmed ID |
|---|---|---|---|---|---|---|---|
| hsa-miR-373-3p | MIMAT0000726 | NA | hsa-miR-373 | 15685193 |
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6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
