HCSGD entry for CDH20
1. General information
| Official gene symbol | CDH20 |
|---|---|
| Entrez ID | 28316 |
| Gene full name | cadherin 20, type 2 |
| Other gene symbols | CDH7L3 Cdh7 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005509 | Calcium ion binding | IEA | molecular_function |
| GO:0005886 | Plasma membrane | IEA | cellular_component |
| GO:0007156 | Homophilic cell adhesion | IEA | biological_process |
| GO:0016020 | Membrane | IEA | cellular_component |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7520802895 | 0.7901090042 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0676066456 |
| GSE13712_SHEAR | Down | -0.0795683287 |
| GSE13712_STATIC | Down | -0.1477526465 |
| GSE19018 | Down | -0.0478041077 |
| GSE19899_A1 | Up | 0.0133324888 |
| GSE19899_A2 | Up | 0.2290529589 |
| PubMed_21979375_A1 | Up | 0.2345379945 |
| PubMed_21979375_A2 | Up | 0.0852526939 |
| GSE35957 | Up | 0.0268118010 |
| GSE36640 | Up | 0.4457041418 |
| GSE54402 | Up | 0.0333068613 |
| GSE9593 | Down | -0.0761064276 |
| GSE43922 | Up | 0.0174068387 |
| GSE24585 | Up | 0.0593304460 |
| GSE37065 | Up | 0.0161034813 |
| GSE28863_A1 | Down | -0.0190323034 |
| GSE28863_A2 | Down | -0.1000380482 |
| GSE28863_A3 | Down | -0.0754642628 |
| GSE28863_A4 | Down | -0.0331028597 |
| GSE48662 | Up | 0.0675595277 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT016914 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-148b-3p | MIMAT0000759 | MIRT019298 | Microarray | Functional MTI (Weak) | 17612493 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
