HCSGD entry for RBM20
1. General information
| Official gene symbol | RBM20 |
|---|---|
| Entrez ID | 282996 |
| Gene full name | RNA binding motif protein 20 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000166 | Nucleotide binding | IEA | molecular_function |
| GO:0003723 | RNA binding | ISS | molecular_function |
| GO:0005634 | Nucleus | ISS | cellular_component |
| GO:0006397 | MRNA processing | IEA | biological_process |
| GO:0007507 | Heart development | IMP | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0008380 | RNA splicing | IEA | biological_process |
| GO:0033120 | Positive regulation of RNA splicing | IMP | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1923242126 | 0.8400189241 | 0.8506446405 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1602439883 |
| GSE13712_SHEAR | Up | 0.0276262266 |
| GSE13712_STATIC | Down | -0.0165172953 |
| GSE19018 | Down | -0.2564448365 |
| GSE19899_A1 | Down | -0.0587998522 |
| GSE19899_A2 | Up | 0.1987621625 |
| PubMed_21979375_A1 | Up | 0.7613544668 |
| PubMed_21979375_A2 | Up | 0.4756234590 |
| GSE35957 | Up | 0.0247126516 |
| GSE36640 | Down | -0.2002789156 |
| GSE54402 | Up | 1.4099466009 |
| GSE9593 | Down | -0.1575476900 |
| GSE43922 | - | - |
| GSE24585 | - | - |
| GSE37065 | - | - |
| GSE28863_A1 | Down | -0.1220161729 |
| GSE28863_A2 | Down | -0.1370701414 |
| GSE28863_A3 | Up | 0.3065511264 |
| GSE28863_A4 | Up | 0.0539552943 |
| GSE48662 | Down | -0.0317259286 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-296-3p | MIMAT0004679 | MIRT038341 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
