HCSGD entry for LSM1
1. General information
| Official gene symbol | LSM1 |
|---|---|
| Entrez ID | 27257 |
| Gene full name | LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae) |
| Other gene symbols | CASM YJL124C |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000288 | Nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | TAS | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | TAS | biological_process |
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0006397 | MRNA processing | IEA | biological_process |
| GO:0008380 | RNA splicing | TAS | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0016070 | RNA metabolic process | TAS | biological_process |
| GO:0016071 | MRNA metabolic process | TAS | biological_process |
| GO:0030529 | Ribonucleoprotein complex | IEA | cellular_component |
| GO:0043928 | Exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay | TAS | biological_process |
| GO:0071044 | Histone mRNA catabolic process | IMP | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4166682307 | 0.8320675582 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.3714639731 |
| GSE13712_SHEAR | Up | 0.2223130797 |
| GSE13712_STATIC | Up | 0.1369484742 |
| GSE19018 | Down | -0.1533208064 |
| GSE19899_A1 | Down | -0.1245151742 |
| GSE19899_A2 | Up | 0.2001662127 |
| PubMed_21979375_A1 | Up | 0.1681019517 |
| PubMed_21979375_A2 | Up | 0.2181998859 |
| GSE35957 | Down | -0.2817574554 |
| GSE36640 | Up | 0.0020620179 |
| GSE54402 | Up | 0.0769891141 |
| GSE9593 | Down | -0.2545744680 |
| GSE43922 | Up | 0.0020845503 |
| GSE24585 | Up | 0.2403006790 |
| GSE37065 | Down | -0.0591072579 |
| GSE28863_A1 | Up | 0.0518900033 |
| GSE28863_A2 | Up | 0.0810998481 |
| GSE28863_A3 | Up | 0.0939569934 |
| GSE28863_A4 | Up | 0.1614610933 |
| GSE48662 | Down | -0.2057290419 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-30a-5p | MIMAT0000087 | MIRT028662 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT030039 | Microarray | Functional MTI (Weak) | 19088304 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
