HCSGD entry for SNX5
1. General information
| Official gene symbol | SNX5 |
|---|---|
| Entrez ID | 27131 |
| Gene full name | sorting nexin 5 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001726 | Ruffle | IEA | cellular_component |
| GO:0001891 | Phagocytic cup | IEA | cellular_component |
| GO:0006907 | Pinocytosis | IDA | biological_process |
| GO:0007154 | Cell communication | IEA | biological_process |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0030659 | Cytoplasmic vesicle membrane | IEA | cellular_component |
| GO:0031234 | Extrinsic component of cytoplasmic side of plasma membrane | IDA | cellular_component |
| GO:0031313 | Extrinsic component of endosome membrane | IDA | cellular_component |
| GO:0031901 | Early endosome membrane | IDA | cellular_component |
| GO:0035091 | Phosphatidylinositol binding | IDA IEA ISS | molecular_function |
| GO:0070685 | Macropinocytic cup | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9420905437 | 0.1210523156 | 0.9999902473 | 0.6686711438 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0975644773 |
| GSE13712_SHEAR | Up | 0.2814129320 |
| GSE13712_STATIC | Up | 0.1094707522 |
| GSE19018 | Up | 0.0065390307 |
| GSE19899_A1 | Down | -0.1797747441 |
| GSE19899_A2 | Up | 0.0042076177 |
| PubMed_21979375_A1 | Up | 0.1395663210 |
| PubMed_21979375_A2 | Down | -0.1262518038 |
| GSE35957 | Down | -0.4135146972 |
| GSE36640 | Down | -0.9031029983 |
| GSE54402 | Down | -0.0563354285 |
| GSE9593 | Down | -0.2779015991 |
| GSE43922 | Down | -0.0669105488 |
| GSE24585 | Down | -0.0404614441 |
| GSE37065 | Down | -0.3426388057 |
| GSE28863_A1 | Up | 0.0859745952 |
| GSE28863_A2 | Up | 0.1046014919 |
| GSE28863_A3 | Down | -0.1425860863 |
| GSE28863_A4 | Up | 0.1603870147 |
| GSE48662 | Down | -0.5438941918 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-98-5p | MIMAT0000096 | MIRT027465 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-652-3p | MIMAT0003322 | MIRT039538 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
