HCSGD entry for TRAPPC3
1. General information
| Official gene symbol | TRAPPC3 |
|---|---|
| Entrez ID | 27095 |
| Gene full name | trafficking protein particle complex 3 |
| Other gene symbols | BET3 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | IEA | cellular_component |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005783 | Endoplasmic reticulum | IEA | cellular_component |
| GO:0005794 | Golgi apparatus | IDA | cellular_component |
| GO:0005829 | Cytosol | IEA | cellular_component |
| GO:0006888 | ER to Golgi vesicle-mediated transport | IEA | biological_process |
| GO:0030008 | TRAPP complex | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0209484442 | 0.9869486912 | 0.3488982301 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.6185788476 |
| GSE13712_SHEAR | Up | 0.1681743064 |
| GSE13712_STATIC | Up | 0.2847551776 |
| GSE19018 | Up | 0.1097827442 |
| GSE19899_A1 | Up | 0.6609312503 |
| GSE19899_A2 | Up | 0.8082305621 |
| PubMed_21979375_A1 | Up | 0.4846609293 |
| PubMed_21979375_A2 | Up | 0.2616250326 |
| GSE35957 | Up | 0.1344495759 |
| GSE36640 | Up | 0.4382474042 |
| GSE54402 | Up | 0.3723813198 |
| GSE9593 | Up | 0.3153188011 |
| GSE43922 | Up | 0.2315911836 |
| GSE24585 | Down | -0.0415738561 |
| GSE37065 | Down | -0.0401993859 |
| GSE28863_A1 | Down | -0.2441151074 |
| GSE28863_A2 | Up | 0.1646891583 |
| GSE28863_A3 | Down | -0.1276699019 |
| GSE28863_A4 | Down | -0.1196172544 |
| GSE48662 | Up | 0.3904806088 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Name | Drug | Accession number |
|---|---|---|
| Palmitic Acid | DB03796 | EXPT01393 | EXPT02607 |
| MYRISTIC ACID | DB08231 | - |
| S-PALMITOYL-L-CYSTEINE | DB08342 | - |
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | MIRT002767 | Microarray//Microarray;Other | Functional MTI (Weak) | 15685193 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT030205 | Microarray | Functional MTI (Weak) | 19088304 |
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- mirRecord
- mirRecord
MicroRNA name | mirBase ID | Target site number | MiRNA mature ID | Test method inter | MiRNA regulation site | Reporter target site | Pubmed ID |
|---|---|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | NA | hsa-miR-1 | 15685193 |
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6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
