HCSGD entry for SNED1

1. General information

Official gene symbolSNED1
Entrez ID25992
Gene full namesushi, nidogen and EGF-like domains 1
Other gene symbolsSST3 Snep
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in PPI subnetwork.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0005509Calcium ion bindingIEAmolecular_function
GO:0005576Extracellular regionIEAcellular_component
GO:0007160Cell-matrix adhesionIEAbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.04769240530.61459114400.48235151751.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Down-0.0113088200
GSE13712_SHEARDown-0.3110366372
GSE13712_STATICDown-0.4383829137
GSE19018Down-0.1671064848
GSE19899_A1Up0.2424407050
GSE19899_A2Up0.0241995668
PubMed_21979375_A1Up0.4712798725
PubMed_21979375_A2Up0.4510722848
GSE35957Down-0.1523445233
GSE36640Up0.0899228250
GSE54402Up0.0783735482
GSE9593Down-0.3721981940
GSE43922Up0.1643874237
GSE24585Up0.3329120300
GSE37065Down-0.1770627820
GSE28863_A1Up1.3253736816
GSE28863_A2Up0.5439757569
GSE28863_A3Up0.2279999338
GSE28863_A4Down-0.1883259908
GSE48662Up0.2020540978

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

    • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-335-5pMIMAT0000765MIRT016924MicroarrayFunctional MTI (Weak)18185580
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    • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.