HCSGD entry for PNKD
1. General information
| Official gene symbol | PNKD |
|---|---|
| Entrez ID | 25953 |
| Gene full name | paroxysmal nonkinesigenic dyskinesia |
| Other gene symbols | BRP17 DYT8 FPD1 KIPP1184 MR-1 MR1 PDC PKND1 TAHCCP2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004416 | Hydroxyacylglutathione hydrolase activity | IEA | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005739 | Mitochondrion | IDA | cellular_component |
| GO:0006750 | Glutathione biosynthetic process | IEA | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0016020 | Membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3406647658 | 0.6990336119 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1808503793 |
| GSE13712_SHEAR | Down | -0.1888480852 |
| GSE13712_STATIC | Up | 0.0992469558 |
| GSE19018 | Down | -0.1204822864 |
| GSE19899_A1 | Up | 0.1107243825 |
| GSE19899_A2 | Up | 0.6085408300 |
| PubMed_21979375_A1 | Up | 0.6698061422 |
| PubMed_21979375_A2 | Up | 0.9599779028 |
| GSE35957 | Down | -0.2653294849 |
| GSE36640 | Up | 0.3018883109 |
| GSE54402 | Up | 0.0590946749 |
| GSE9593 | Down | -0.3019264503 |
| GSE43922 | Up | 0.0982871366 |
| GSE24585 | Up | 0.0780329953 |
| GSE37065 | Down | -0.0730241177 |
| GSE28863_A1 | Down | -0.3605453072 |
| GSE28863_A2 | Down | -0.1523077777 |
| GSE28863_A3 | Up | 0.0080259351 |
| GSE28863_A4 | Down | -0.0426866650 |
| GSE48662 | Up | 0.0756617221 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-30c-5p | MIMAT0000244 | MIRT047847 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
- mirRecord
MicroRNA name | mirBase ID | Target site number | MiRNA mature ID | Test method inter | MiRNA regulation site | Reporter target site | Pubmed ID |
|---|---|---|---|---|---|---|---|
| hsa-miR-146a-5p | MIMAT0000449 | NA | hsa-miR-146a | 19944095 |
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6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
