HCSGD entry for ATL3
1. General information
| Official gene symbol | ATL3 |
|---|---|
| Entrez ID | 25923 |
| Gene full name | atlastin GTPase 3 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003924 | GTPase activity | IEA NAS | molecular_function |
| GO:0005525 | GTP binding | IEA | molecular_function |
| GO:0005783 | Endoplasmic reticulum | IDA | cellular_component |
| GO:0005789 | Endoplasmic reticulum membrane | IEA | cellular_component |
| GO:0006184 | GTP catabolic process | NAS | biological_process |
| GO:0006888 | ER to Golgi vesicle-mediated transport | IMP | biological_process |
| GO:0007029 | Endoplasmic reticulum organization | IMP | biological_process |
| GO:0007030 | Golgi organization | IMP | biological_process |
| GO:0008152 | Metabolic process | NAS | biological_process |
| GO:0016021 | Integral component of membrane | IDA | cellular_component |
| GO:0042802 | Identical protein binding | IDA | molecular_function |
| GO:0051260 | Protein homooligomerization | IDA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2048106265 | 0.3857481479 | 0.8727247045 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0885417203 |
| GSE13712_SHEAR | Up | 0.1930018646 |
| GSE13712_STATIC | Up | 0.1122103401 |
| GSE19018 | Up | 0.3059930945 |
| GSE19899_A1 | Down | -0.0855654398 |
| GSE19899_A2 | Up | 0.1026593891 |
| PubMed_21979375_A1 | Down | -0.2075265986 |
| PubMed_21979375_A2 | Up | 0.1459419312 |
| GSE35957 | Up | 0.3107984428 |
| GSE36640 | Up | 0.4155677023 |
| GSE54402 | Down | -0.6432111880 |
| GSE9593 | Up | 0.0680710899 |
| GSE43922 | Down | -0.0163644655 |
| GSE24585 | Up | 0.7606783381 |
| GSE37065 | Down | -0.2502758206 |
| GSE28863_A1 | Up | 0.2658541837 |
| GSE28863_A2 | Up | 0.3087243243 |
| GSE28863_A3 | Down | -0.2084232761 |
| GSE28863_A4 | Down | -0.0374059190 |
| GSE48662 | Down | -0.6197720736 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | MIRT023532 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-186-5p | MIMAT0000456 | MIRT044964 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-20a-5p | MIMAT0000075 | MIRT050590 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
