HCSGD entry for GALNT3
1. General information
| Official gene symbol | GALNT3 |
|---|---|
| Entrez ID | 2591 |
| Gene full name | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3) |
| Other gene symbols | GalNAc-T3 HFTC HHS |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | TAS | cellular_component |
| GO:0004653 | Polypeptide N-acetylgalactosaminyltransferase activity | IDA | molecular_function |
| GO:0005509 | Calcium ion binding | IDA | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005794 | Golgi apparatus | IDA | cellular_component |
| GO:0005975 | Carbohydrate metabolic process | NAS | biological_process |
| GO:0016020 | Membrane | TAS | cellular_component |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0016266 | O-glycan processing | TAS | biological_process |
| GO:0016757 | Transferase activity, transferring glycosyl groups | IEA | molecular_function |
| GO:0018242 | Protein O-linked glycosylation via serine | IDA | biological_process |
| GO:0018243 | Protein O-linked glycosylation via threonine | IDA | biological_process |
| GO:0030145 | Manganese ion binding | IDA | molecular_function |
| GO:0032580 | Golgi cisterna membrane | IEA | cellular_component |
| GO:0043687 | Post-translational protein modification | TAS | biological_process |
| GO:0044267 | Cellular protein metabolic process | TAS | biological_process |
| GO:0048471 | Perinuclear region of cytoplasm | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7512648608 | 0.1605830630 | 0.9999902473 | 0.7737216508 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0167600610 |
| GSE13712_SHEAR | Up | 0.2012759783 |
| GSE13712_STATIC | Up | 0.0087478498 |
| GSE19018 | Up | 0.1509034334 |
| GSE19899_A1 | Down | -0.1326269200 |
| GSE19899_A2 | Up | 0.4868765369 |
| PubMed_21979375_A1 | Down | -0.5276233749 |
| PubMed_21979375_A2 | Down | -0.2587289097 |
| GSE35957 | Down | -1.7046979851 |
| GSE36640 | Down | -0.0021248704 |
| GSE54402 | Up | 0.1868085333 |
| GSE9593 | Down | -0.0978300599 |
| GSE43922 | Up | 0.0368066527 |
| GSE24585 | Down | -0.1380877125 |
| GSE37065 | Down | -0.1701641950 |
| GSE28863_A1 | Down | -0.2192681337 |
| GSE28863_A2 | Up | 0.0792019358 |
| GSE28863_A3 | Up | 0.2692842151 |
| GSE28863_A4 | Up | 0.0327712169 |
| GSE48662 | Down | -0.4183950096 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-340-5p | MIMAT0004692 | MIRT019609 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT022631 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031681 | Proteomics | Functional MTI (Weak) | 18668040 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
