HCSGD entry for LMOD1
1. General information
| Official gene symbol | LMOD1 |
|---|---|
| Entrez ID | 25802 |
| Gene full name | leiomodin 1 (smooth muscle) |
| Other gene symbols | 1D 64kD D1 SM-LMOD |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003779 | Actin binding | IEA | molecular_function |
| GO:0005523 | Tropomyosin binding | IEA | molecular_function |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0005856 | Cytoskeleton | IEA | cellular_component |
| GO:0006936 | Muscle contraction | TAS | biological_process |
| GO:0016020 | Membrane | TAS | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1405179021 | 0.0014238327 | 0.7528063072 | 0.0729512621 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -1.9996861499 |
| GSE13712_SHEAR | Down | -0.0208882865 |
| GSE13712_STATIC | Up | 0.0692878915 |
| GSE19018 | Down | -0.5170168103 |
| GSE19899_A1 | Down | -1.1341611796 |
| GSE19899_A2 | Down | -2.5972650276 |
| PubMed_21979375_A1 | Down | -2.2023422016 |
| PubMed_21979375_A2 | Down | -1.5041697156 |
| GSE35957 | Up | 1.4462045571 |
| GSE36640 | Up | 0.6053120250 |
| GSE54402 | Down | -0.8712301026 |
| GSE9593 | Up | 0.7655975942 |
| GSE43922 | Down | -2.3105423393 |
| GSE24585 | Up | 0.8733199147 |
| GSE37065 | Down | -0.2277071851 |
| GSE28863_A1 | Up | 0.4121848182 |
| GSE28863_A2 | Down | -0.6409216927 |
| GSE28863_A3 | Up | 0.1659364734 |
| GSE28863_A4 | Up | 0.0888342779 |
| GSE48662 | Up | 0.5474655810 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT018126 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
