HCSGD entry for FAM21C
1. General information
| Official gene symbol | FAM21C |
|---|---|
| Entrez ID | 253725 |
| Gene full name | family with sequence similarity 21, member C |
| Other gene symbols | FAM21A VPEF |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005768 | Endosome | IDA | cellular_component |
| GO:0005769 | Early endosome | IDA | cellular_component |
| GO:0005886 | Plasma membrane | IEA | cellular_component |
| GO:0031901 | Early endosome membrane | IEA | cellular_component |
| GO:0042147 | Retrograde transport, endosome to Golgi | IMP | biological_process |
| GO:0071203 | WASH complex | IDA IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0265401884 | 0.9815767220 | 0.3798609570 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.7970831849 |
| GSE13712_SHEAR | Down | -0.1184250602 |
| GSE13712_STATIC | Up | 0.2441582076 |
| GSE19018 | Down | -0.2695822178 |
| GSE19899_A1 | Up | 0.1082701121 |
| GSE19899_A2 | Up | 0.5562917191 |
| PubMed_21979375_A1 | Up | 0.4089994503 |
| PubMed_21979375_A2 | Up | 1.1059190529 |
| GSE35957 | Down | -0.1383246437 |
| GSE36640 | Up | 0.2856953749 |
| GSE54402 | Up | 0.1777994146 |
| GSE9593 | Up | 0.6079861295 |
| GSE43922 | - | - |
| GSE24585 | - | - |
| GSE37065 | - | - |
| GSE28863_A1 | Up | 0.1869161387 |
| GSE28863_A2 | Up | 0.0711615561 |
| GSE28863_A3 | Down | -0.0423026389 |
| GSE28863_A4 | Up | 0.0826003588 |
| GSE48662 | Up | 0.5430299112 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-598-3p | MIMAT0003266 | MIRT040482 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-149-5p | MIMAT0000450 | MIRT045583 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-27a-3p | MIMAT0000084 | MIRT050034 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
