HCSGD entry for TRIM29
1. General information
| Official gene symbol | TRIM29 |
|---|---|
| Entrez ID | 23650 |
| Gene full name | tripartite motif containing 29 |
| Other gene symbols | ATDC |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000122 | Negative regulation of transcription from RNA polymerase II promoter | IEA | biological_process |
| GO:0002039 | P53 binding | IEA | molecular_function |
| GO:0003700 | Sequence-specific DNA binding transcription factor activity | TAS | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0006366 | Transcription from RNA polymerase II promoter | TAS | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:1900181 | Negative regulation of protein localization to nucleus | IEA | biological_process |
Entries Per Page
Displaying Page of
4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7391311044 | 0.8295638957 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0519278745 |
| GSE13712_SHEAR | Up | 0.0393424148 |
| GSE13712_STATIC | Down | -0.0154442604 |
| GSE19018 | Up | 0.0650508075 |
| GSE19899_A1 | Up | 0.0823530538 |
| GSE19899_A2 | Up | 0.1559843146 |
| PubMed_21979375_A1 | Up | 0.0630046444 |
| PubMed_21979375_A2 | Down | -0.1319470156 |
| GSE35957 | Up | 0.2065204143 |
| GSE36640 | Up | 0.1102149147 |
| GSE54402 | Up | 0.0267943345 |
| GSE9593 | Up | 0.0930350980 |
| GSE43922 | Up | 0.0219856215 |
| GSE24585 | Up | 0.0554901205 |
| GSE37065 | Up | 0.0756124035 |
| GSE28863_A1 | Down | -0.2856328159 |
| GSE28863_A2 | Down | -0.2228268714 |
| GSE28863_A3 | Up | 0.1146553100 |
| GSE28863_A4 | Down | -0.0254582111 |
| GSE48662 | Up | 0.0856502184 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT002561 | Microarray//Microarray;Other | Functional MTI (Weak) | 15685193 |
| hsa-miR-335-5p | MIMAT0000765 | MIRT018621 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-122-5p | MIMAT0000421 | MIRT023394 | Microarray | Functional MTI (Weak) | 17612493 |
Entries Per Page
Displaying Page of
- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
