HCSGD entry for RPL13A

1. General information

Official gene symbolRPL13A
Entrez ID23521
Gene full nameribosomal protein L13a
Other gene symbolsL13A TSTA1
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

color bar
This gene isn't in PPI subnetwork.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0000184Nuclear-transcribed mRNA catabolic process, nonsense-mediated decayTASbiological_process
GO:0003735Structural constituent of ribosomeIEA NASmolecular_function
GO:0005829CytosolTAScellular_component
GO:0005840RibosomeIEAcellular_component
GO:0006412TranslationIEA NAS TASbiological_process
GO:0006413Translational initiationTASbiological_process
GO:0006414Translational elongationTASbiological_process
GO:0006415Translational terminationTASbiological_process
GO:0006614SRP-dependent cotranslational protein targeting to membraneTASbiological_process
GO:0010467Gene expressionTASbiological_process
GO:0015934Large ribosomal subunitIEA TAScellular_component
GO:0016032Viral processTASbiological_process
GO:0016070RNA metabolic processTASbiological_process
GO:0016071MRNA metabolic processTASbiological_process
GO:0017148Negative regulation of translationIDA IMPbiological_process
GO:0019058Viral life cycleTASbiological_process
GO:0019083Viral transcriptionTASbiological_process
GO:0022625Cytosolic large ribosomal subunitIDAcellular_component
GO:0030529Ribonucleoprotein complexIDAcellular_component
GO:0044267Cellular protein metabolic processTASbiological_process
GO:0071346Cellular response to interferon-gammaIDAbiological_process
GO:0097452GAIT complexIDAcellular_component
GO:1901194Negative regulation of formation of translation preinitiation complexIDAbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.46974286690.58203216440.99999024731.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954--
GSE13712_SHEAR--
GSE13712_STATIC--
GSE19018--
GSE19899_A1--
GSE19899_A2--
PubMed_21979375_A1--
PubMed_21979375_A2--
GSE35957--
GSE36640--
GSE54402--
GSE9593--
GSE43922--
GSE24585--
GSE37065--
GSE28863_A1Down-0.2277643187
GSE28863_A2Down-0.4010145893
GSE28863_A3Up0.7075399393
GSE28863_A4Up0.4488175318
GSE48662Down-0.1775970805

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Name

Drug

Accession number

Alpha-Hydroxy-Beta-Phenyl-Propionic AcidDB02494 EXPT01733
AnisomycinDB07374 -
PuromycinDB08437 -

  • MicroRNAs

    • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-877-3pMIMAT0004950MIRT037072CLASHFunctional MTI (Weak)23622248
hsa-miR-769-3pMIMAT0003887MIRT039128CLASHFunctional MTI (Weak)23622248
hsa-miR-576-5pMIMAT0003241MIRT040518CLASHFunctional MTI (Weak)23622248
hsa-miR-320aMIMAT0000510MIRT044446CLASHFunctional MTI (Weak)23622248
hsa-miR-197-3pMIMAT0000227MIRT048145CLASHFunctional MTI (Weak)23622248
hsa-miR-92a-3pMIMAT0000092MIRT049196CLASHFunctional MTI (Weak)23622248
hsa-miR-26a-5pMIMAT0000082MIRT050090CLASHFunctional MTI (Weak)23622248
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    • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.