HCSGD entry for CBX6
1. General information
| Official gene symbol | CBX6 |
|---|---|
| Entrez ID | 23466 |
| Gene full name | chromobox homolog 6 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000122 | Negative regulation of transcription from RNA polymerase II promoter | IMP | biological_process |
| GO:0000792 | Heterochromatin | IEA | cellular_component |
| GO:0003727 | Single-stranded RNA binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA IEA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0016568 | Chromatin modification | IEA | biological_process |
| GO:0031519 | PcG protein complex | IDA | cellular_component |
Entries Per Page
Displaying Page of
4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1036674594 | 0.4177818586 | 0.6695574583 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2852177238 |
| GSE13712_SHEAR | Down | -0.8127376719 |
| GSE13712_STATIC | Down | -0.4061441961 |
| GSE19018 | Down | -0.4889880733 |
| GSE19899_A1 | Up | 0.0978329001 |
| GSE19899_A2 | Up | 0.5463262534 |
| PubMed_21979375_A1 | Down | -0.0825629124 |
| PubMed_21979375_A2 | Up | 0.5596539426 |
| GSE35957 | Up | 0.1836063482 |
| GSE36640 | Up | 0.6079087033 |
| GSE54402 | Up | 0.1315904372 |
| GSE9593 | Up | 0.1437815458 |
| GSE43922 | Up | 0.0812040207 |
| GSE24585 | Down | -0.6318224076 |
| GSE37065 | Down | -0.1353609068 |
| GSE28863_A1 | Up | 0.5383957629 |
| GSE28863_A2 | Up | 0.3646429991 |
| GSE28863_A3 | Down | -0.0522539203 |
| GSE28863_A4 | Down | -0.1239311260 |
| GSE48662 | Up | 0.4132641152 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029448 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-874-3p | MIMAT0004911 | MIRT037768 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT039667 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-484 | MIMAT0002174 | MIRT041709 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-328-3p | MIMAT0000752 | MIRT043813 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-182-5p | MIMAT0000259 | MIRT047178 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049019 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7c-5p | MIMAT0000064 | MIRT051814 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT052310 | CLASH | Functional MTI (Weak) | 23622248 |
Entries Per Page
Displaying Page of
- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
