HCSGD entry for CTDNEP1
1. General information
| Official gene symbol | CTDNEP1 |
|---|---|
| Entrez ID | 23399 |
| Gene full name | CTD nuclear envelope phosphatase 1 |
| Other gene symbols | DULLARD HSA011916 NET56 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004722 | Protein serine/threonine phosphatase activity | IMP | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005635 | Nuclear envelope | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005789 | Endoplasmic reticulum membrane | IDA | cellular_component |
| GO:0006470 | Protein dephosphorylation | IDA | biological_process |
| GO:0006998 | Nuclear envelope organization | IDA | biological_process |
| GO:0010867 | Positive regulation of triglyceride biosynthetic process | IGI | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0016791 | Phosphatase activity | IEA | molecular_function |
| GO:0031965 | Nuclear membrane | IDA | cellular_component |
| GO:0034504 | Protein localization to nucleus | IDA | biological_process |
| GO:0071595 | Nem1-Spo7 phosphatase complex | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4998287109 | 0.1850830554 | 0.9999902473 | 0.8340303202 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1640186406 |
| GSE13712_SHEAR | Down | -0.3180696199 |
| GSE13712_STATIC | Down | -0.1483800739 |
| GSE19018 | Up | 0.0227339012 |
| GSE19899_A1 | Down | -0.1856542522 |
| GSE19899_A2 | Up | 0.2745169275 |
| PubMed_21979375_A1 | Up | 0.7244469157 |
| PubMed_21979375_A2 | Up | 0.8098774038 |
| GSE35957 | Down | -0.5414409520 |
| GSE36640 | Down | -0.7022984233 |
| GSE54402 | Up | 0.3817567194 |
| GSE9593 | Down | -0.5717525918 |
| GSE43922 | Up | 0.2065845575 |
| GSE24585 | Up | 0.0267701203 |
| GSE37065 | Down | -0.1733461947 |
| GSE28863_A1 | Down | -0.1278760783 |
| GSE28863_A2 | Down | -0.1910757079 |
| GSE28863_A3 | Down | -0.1710943738 |
| GSE28863_A4 | Down | -0.1260446678 |
| GSE48662 | Up | 0.0148399035 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | MIRT023923 | Proteomics;Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029871 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-1229-3p | MIMAT0005584 | MIRT036334 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-1226-3p | MIMAT0005577 | MIRT036478 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
