HCSGD entry for CSTF2T
1. General information
| Official gene symbol | CSTF2T |
|---|---|
| Entrez ID | 23283 |
| Gene full name | cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant |
| Other gene symbols | CstF-64T |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000166 | Nucleotide binding | IEA | molecular_function |
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0005622 | Intracellular | IDA | cellular_component |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0006397 | MRNA processing | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4659578663 | 0.1007487823 | 0.9999902473 | 0.6083016044 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0297949208 |
| GSE13712_SHEAR | Down | -0.4560706723 |
| GSE13712_STATIC | Down | -0.1736974663 |
| GSE19018 | Down | -0.9833871387 |
| GSE19899_A1 | Up | 0.0646942780 |
| GSE19899_A2 | Down | -0.3983662754 |
| PubMed_21979375_A1 | Up | 0.4527401501 |
| PubMed_21979375_A2 | Down | -0.5819109265 |
| GSE35957 | Up | 0.1716222497 |
| GSE36640 | Down | -0.8933633609 |
| GSE54402 | Up | 0.1188261957 |
| GSE9593 | Down | -0.1068413553 |
| GSE43922 | Up | 0.0209396757 |
| GSE24585 | Down | -0.3305248423 |
| GSE37065 | Up | 0.1681523985 |
| GSE28863_A1 | Up | 0.8104706764 |
| GSE28863_A2 | Up | 0.2218876983 |
| GSE28863_A3 | Up | 0.1879505600 |
| GSE28863_A4 | Up | 0.1255459420 |
| GSE48662 | Down | -0.0818591509 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-148b-3p | MIMAT0000759 | MIRT019281 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-132-3p | MIMAT0000426 | MIRT021731 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-221-3p | MIMAT0000278 | MIRT024141 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049824 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7c-5p | MIMAT0000064 | MIRT051741 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: 1 abstracts the gene occurs.
PubMed ID of the article | Sentenece the gene occurs |
|---|---|
| 24478790 | 2; and RASGEF1A, HNRNPF, ANF487, CSTF2T, and PRKG1 at 10q11 |
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