HCSGD entry for SNX13
1. General information
| Official gene symbol | SNX13 |
|---|---|
| Entrez ID | 23161 |
| Gene full name | sorting nexin 13 |
| Other gene symbols | RGS-PX1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005769 | Early endosome | IDA | cellular_component |
| GO:0006886 | Intracellular protein transport | IMP | biological_process |
| GO:0007154 | Cell communication | IEA | biological_process |
| GO:0031901 | Early endosome membrane | IEA | cellular_component |
| GO:0035091 | Phosphatidylinositol binding | IDA IEA | molecular_function |
| GO:0038032 | Termination of G-protein coupled receptor signaling pathway | IEA | biological_process |
| GO:0043547 | Positive regulation of GTPase activity | IDA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2957103833 | 0.6503919684 | 0.9948878451 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0123135058 |
| GSE13712_SHEAR | Down | -0.2180953626 |
| GSE13712_STATIC | Down | -0.1688954191 |
| GSE19018 | Up | 0.1036970747 |
| GSE19899_A1 | Up | 0.1554647737 |
| GSE19899_A2 | Up | 0.1474718417 |
| PubMed_21979375_A1 | Up | 0.4702283989 |
| PubMed_21979375_A2 | Up | 0.0993622327 |
| GSE35957 | Up | 0.2640225002 |
| GSE36640 | Up | 0.1028534328 |
| GSE54402 | Down | -0.0955853543 |
| GSE9593 | Up | 0.2406992708 |
| GSE43922 | Up | 0.0164001203 |
| GSE24585 | Up | 0.4515267159 |
| GSE37065 | Up | 0.1438382537 |
| GSE28863_A1 | Down | -0.0319096041 |
| GSE28863_A2 | Up | 0.4573229242 |
| GSE28863_A3 | Down | -0.7007703280 |
| GSE28863_A4 | Down | -0.3177941382 |
| GSE48662 | Down | -0.1325263251 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-215-5p | MIMAT0000272 | MIRT024720 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026298 | Microarray | Functional MTI (Weak) | 19074876 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
