HCSGD entry for COLGALT2
1. General information
| Official gene symbol | COLGALT2 |
|---|---|
| Entrez ID | 23127 |
| Gene full name | collagen beta(1-O)galactosyltransferase 2 |
| Other gene symbols | C1orf17 GLT25D2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005788 | Endoplasmic reticulum lumen | TAS | cellular_component |
| GO:0009103 | Lipopolysaccharide biosynthetic process | IEA | biological_process |
| GO:0030198 | Extracellular matrix organization | TAS | biological_process |
| GO:0050211 | Procollagen galactosyltransferase activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7856919646 | 0.0900071464 | 0.9999902473 | 0.5695180005 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0112990242 |
| GSE13712_SHEAR | Down | -0.0181732044 |
| GSE13712_STATIC | Down | -0.0236259934 |
| GSE19018 | Up | 0.2772058452 |
| GSE19899_A1 | Down | -0.0412088402 |
| GSE19899_A2 | Down | -0.3842398688 |
| PubMed_21979375_A1 | Down | -2.3088518708 |
| PubMed_21979375_A2 | Down | -0.6981253329 |
| GSE35957 | Up | 0.8969170286 |
| GSE36640 | Down | -0.0971557152 |
| GSE54402 | Down | -0.3144974286 |
| GSE9593 | Up | 0.2059282680 |
| GSE43922 | Down | -0.6294654489 |
| GSE24585 | Up | 0.0793016467 |
| GSE37065 | Up | 0.0410231410 |
| GSE28863_A1 | Down | -0.1457898695 |
| GSE28863_A2 | Down | -0.2127941752 |
| GSE28863_A3 | Down | -0.1041769404 |
| GSE28863_A4 | Up | 0.0431682444 |
| GSE48662 | Up | 0.3229360639 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT017650 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
