HCSGD entry for PDXDC1
1. General information
| Official gene symbol | PDXDC1 |
|---|---|
| Entrez ID | 23042 |
| Gene full name | pyridoxal-dependent decarboxylase domain containing 1 |
| Other gene symbols | LP8165 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0016831 | Carboxy-lyase activity | IEA | molecular_function |
| GO:0019752 | Carboxylic acid metabolic process | IEA | biological_process |
| GO:0030170 | Pyridoxal phosphate binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7594782037 | 0.9051159986 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0375349870 |
| GSE13712_SHEAR | Up | 0.2151559124 |
| GSE13712_STATIC | Up | 0.0326961187 |
| GSE19018 | Up | 0.1198390191 |
| GSE19899_A1 | Up | 0.0633522674 |
| GSE19899_A2 | Up | 0.0296228533 |
| PubMed_21979375_A1 | Down | -0.1348558232 |
| PubMed_21979375_A2 | Down | -0.1192724392 |
| GSE35957 | Up | 0.0697735655 |
| GSE36640 | Up | 0.0498871986 |
| GSE54402 | Up | 0.0517290608 |
| GSE9593 | Down | -0.0166712876 |
| GSE43922 | - | - |
| GSE24585 | - | - |
| GSE37065 | - | - |
| GSE28863_A1 | - | - |
| GSE28863_A2 | - | - |
| GSE28863_A3 | - | - |
| GSE28863_A4 | - | - |
| GSE48662 | Down | -0.0753267694 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Name | Drug | Accession number |
|---|---|---|
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-193b-3p | MIMAT0002819 | MIRT016276 | Proteomics | Functional MTI (Weak) | 21512034 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT040072 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-222-3p | MIMAT0000279 | MIRT046621 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
