HCSGD entry for SNRNP200
1. General information
| Official gene symbol | SNRNP200 |
|---|---|
| Entrez ID | 23020 |
| Gene full name | small nuclear ribonucleoprotein 200kDa (U5) |
| Other gene symbols | ASCC3L1 BRR2 HELIC2 RP33 U5-200KD |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000354 | Cis assembly of pre-catalytic spliceosome | IC | biological_process |
| GO:0000398 | MRNA splicing, via spliceosome | IC IDA TAS | biological_process |
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0004004 | ATP-dependent RNA helicase activity | IDA | molecular_function |
| GO:0004386 | Helicase activity | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005524 | ATP binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005654 | Nucleoplasm | TAS | cellular_component |
| GO:0005681 | Spliceosomal complex | IDA | cellular_component |
| GO:0005682 | U5 snRNP | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0006200 | ATP catabolic process | IDA | biological_process |
| GO:0008026 | ATP-dependent helicase activity | IDA IEA | molecular_function |
| GO:0008380 | RNA splicing | TAS | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0019013 | Viral nucleocapsid | IEA | cellular_component |
| GO:0030529 | Ribonucleoprotein complex | IEA | cellular_component |
| GO:0042802 | Identical protein binding | IPI | molecular_function |
| GO:0071013 | Catalytic step 2 spliceosome | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3719991376 | 0.5501894153 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2666516631 |
| GSE13712_SHEAR | Up | 0.4794465999 |
| GSE13712_STATIC | Up | 0.3749166894 |
| GSE19018 | Down | -0.1041024232 |
| GSE19899_A1 | Up | 0.1660887364 |
| GSE19899_A2 | Up | 0.1599340691 |
| PubMed_21979375_A1 | Down | -0.2259138770 |
| PubMed_21979375_A2 | Up | 0.7505671703 |
| GSE35957 | Down | -0.1898896011 |
| GSE36640 | Down | -0.7346923931 |
| GSE54402 | Down | -0.0632236078 |
| GSE9593 | Down | -0.4061157220 |
| GSE43922 | - | - |
| GSE24585 | - | - |
| GSE37065 | - | - |
| GSE28863_A1 | Down | -0.1851778510 |
| GSE28863_A2 | Down | -0.0828600195 |
| GSE28863_A3 | Up | 0.2454212960 |
| GSE28863_A4 | Up | 0.0439407515 |
| GSE48662 | Down | -0.0128448465 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-877-3p | MIMAT0004950 | MIRT037150 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-151a-5p | MIMAT0004697 | MIRT038194 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-425-5p | MIMAT0003393 | MIRT039338 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-548b-3p | MIMAT0003254 | MIRT040511 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-193b-3p | MIMAT0002819 | MIRT041550 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-149-5p | MIMAT0000450 | MIRT045437 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-30b-5p | MIMAT0000420 | MIRT046154 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-99a-5p | MIMAT0000097 | MIRT048637 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
