HCSGD entry for WDFY3
1. General information
| Official gene symbol | WDFY3 |
|---|---|
| Entrez ID | 23001 |
| Gene full name | WD repeat and FYVE domain containing 3 |
| Other gene symbols | ALFY ZFYVE25 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003831 | Beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005545 | 1-phosphatidylinositol binding | IDA | molecular_function |
| GO:0005635 | Nuclear envelope | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005776 | Autophagic vacuole | IDA | cellular_component |
| GO:0019898 | Extrinsic component of membrane | IDA | cellular_component |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0690051290 | 0.7444782797 | 0.5623709997 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0760859302 |
| GSE13712_SHEAR | Up | 0.5107454406 |
| GSE13712_STATIC | Up | 0.6096495759 |
| GSE19018 | Up | 0.0178911206 |
| GSE19899_A1 | Up | 0.0737104659 |
| GSE19899_A2 | Down | -0.2753652732 |
| PubMed_21979375_A1 | Down | -0.3877070927 |
| PubMed_21979375_A2 | Up | 0.2345294501 |
| GSE35957 | Up | 0.4487453587 |
| GSE36640 | Up | 0.0925463319 |
| GSE54402 | Up | 0.0458058462 |
| GSE9593 | Up | 0.5000785777 |
| GSE43922 | Up | 0.0041503318 |
| GSE24585 | Up | 0.1594045855 |
| GSE37065 | Up | 0.1582222258 |
| GSE28863_A1 | Up | 0.7142738005 |
| GSE28863_A2 | Up | 0.7516557123 |
| GSE28863_A3 | Down | -0.6764220185 |
| GSE28863_A4 | Down | -0.4122104884 |
| GSE48662 | Up | 0.0821545963 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-19a-3p | MIMAT0000073 | MIRT050648 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7e-5p | MIMAT0000066 | MIRT051573 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
