HCSGD entry for ABCF1
1. General information
| Official gene symbol | ABCF1 |
|---|---|
| Entrez ID | 23 |
| Gene full name | ATP-binding cassette, sub-family F (GCN20), member 1 |
| Other gene symbols | ABC27 ABC50 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005524 | ATP binding | IDA IEA | molecular_function |
| GO:0005635 | Nuclear envelope | IDA IEA | cellular_component |
| GO:0005654 | Nucleoplasm | IDA IEA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005840 | Ribosome | IEA | cellular_component |
| GO:0006412 | Translation | TAS | biological_process |
| GO:0006413 | Translational initiation | IMP | biological_process |
| GO:0006954 | Inflammatory response | TAS | biological_process |
| GO:0008135 | Translation factor activity, nucleic acid binding | TAS | molecular_function |
| GO:0008494 | Translation activator activity | IDA | molecular_function |
| GO:0016887 | ATPase activity | IEA | molecular_function |
| GO:0042254 | Ribosome biogenesis | IDA | biological_process |
| GO:0042788 | Polysomal ribosome | IDA | cellular_component |
| GO:0043022 | Ribosome binding | IDA | molecular_function |
| GO:0045727 | Positive regulation of translation | IDA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0220094487 | 0.9461185213 | 0.3554053374 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.3952211871 |
| GSE13712_SHEAR | Up | 0.0237922057 |
| GSE13712_STATIC | Up | 0.0596868229 |
| GSE19018 | Down | -0.1295932930 |
| GSE19899_A1 | Up | 0.4765436747 |
| GSE19899_A2 | Up | 0.5867445514 |
| PubMed_21979375_A1 | Up | 0.8761802369 |
| PubMed_21979375_A2 | Up | 1.4156575589 |
| GSE35957 | Down | -0.2818646924 |
| GSE36640 | Down | -0.6476158237 |
| GSE54402 | Up | 0.7375915755 |
| GSE9593 | Up | 0.0352167801 |
| GSE43922 | Up | 0.3595504992 |
| GSE24585 | Down | -0.1462023362 |
| GSE37065 | Down | -0.0022533573 |
| GSE28863_A1 | Up | 0.0940395841 |
| GSE28863_A2 | Up | 0.2150394975 |
| GSE28863_A3 | Up | 0.3913202385 |
| GSE28863_A4 | Down | -0.0410215181 |
| GSE48662 | Up | 0.0179052916 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-183-5p | MIMAT0000261 | MIRT025000 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-98-5p | MIMAT0000096 | MIRT027413 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT028745 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031407 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT040193 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-484 | MIMAT0002174 | MIRT041991 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-23b-3p | MIMAT0000418 | MIRT046277 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT052203 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
