HCSGD entry for SPATA13
1. General information
| Official gene symbol | SPATA13 |
|---|---|
| Entrez ID | 221178 |
| Gene full name | spermatogenesis associated 13 |
| Other gene symbols | ARHGEF29 ASEF2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005085 | Guanyl-nucleotide exchange factor activity | IDA IMP | molecular_function |
| GO:0005089 | Rho guanyl-nucleotide exchange factor activity | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0016477 | Cell migration | IMP | biological_process |
| GO:0030027 | Lamellipodium | IDA | cellular_component |
| GO:0030032 | Lamellipodium assembly | IMP | biological_process |
| GO:0030175 | Filopodium | IDA | cellular_component |
| GO:0030334 | Regulation of cell migration | IMP | biological_process |
| GO:0030676 | Rac guanyl-nucleotide exchange factor activity | IDA IMP | molecular_function |
| GO:0032314 | Regulation of Rac GTPase activity | IDA IMP | biological_process |
| GO:0032318 | Regulation of Ras GTPase activity | IDA IMP | biological_process |
| GO:0032319 | Regulation of Rho GTPase activity | IDA IMP | biological_process |
| GO:0032587 | Ruffle membrane | IDA | cellular_component |
| GO:0043087 | Regulation of GTPase activity | IDA IMP | biological_process |
| GO:0046847 | Filopodium assembly | IMP | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7332971848 | 0.3421675202 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1374044534 |
| GSE13712_SHEAR | Down | -0.3511957032 |
| GSE13712_STATIC | Down | -0.1619136088 |
| GSE19018 | Down | -0.1121956720 |
| GSE19899_A1 | Up | 0.0739075485 |
| GSE19899_A2 | Down | -0.2841819433 |
| PubMed_21979375_A1 | Down | -0.1708708887 |
| PubMed_21979375_A2 | Down | -0.2509553551 |
| GSE35957 | Down | -0.2713389333 |
| GSE36640 | Down | -0.0274496217 |
| GSE54402 | Up | 0.1809237786 |
| GSE9593 | Up | 0.3323670117 |
| GSE43922 | Up | 0.0506036308 |
| GSE24585 | Down | -0.4207957410 |
| GSE37065 | Up | 0.1826468350 |
| GSE28863_A1 | Up | 0.2100290052 |
| GSE28863_A2 | Up | 0.1232515548 |
| GSE28863_A3 | Up | 0.1974823808 |
| GSE28863_A4 | Up | 0.0150683300 |
| GSE48662 | Up | 0.3413916103 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-192-5p | MIMAT0000222 | MIRT026810 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-27a-3p | MIMAT0000084 | MIRT028714 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-let-7e-5p | MIMAT0000066 | MIRT051545 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
