HCSGD entry for OTUD1
1. General information
| Official gene symbol | OTUD1 |
|---|---|
| Entrez ID | 220213 |
| Gene full name | OTU domain containing 1 |
| Other gene symbols | DUBA7 OTDC1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004843 | Ubiquitin-specific protease activity | IDA | molecular_function |
| GO:0006508 | Proteolysis | IEA | biological_process |
| GO:0070536 | Protein K63-linked deubiquitination | IDA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2738842825 | 0.0705931993 | 0.9702713190 | 0.5015070445 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.5422217669 |
| GSE13712_SHEAR | Down | -1.0662425343 |
| GSE13712_STATIC | Down | -1.1218359537 |
| GSE19018 | Up | 1.1663490487 |
| GSE19899_A1 | Down | -0.2201539639 |
| GSE19899_A2 | Down | -0.2437356344 |
| PubMed_21979375_A1 | Up | 0.6704460432 |
| PubMed_21979375_A2 | Down | -0.0029158442 |
| GSE35957 | Up | 0.3992019607 |
| GSE36640 | Down | -0.4497577763 |
| GSE54402 | Down | -0.1736224091 |
| GSE9593 | Up | 0.2287503394 |
| GSE43922 | Up | 0.0543738558 |
| GSE24585 | Down | -0.5451593028 |
| GSE37065 | Up | 0.1747971405 |
| GSE28863_A1 | Up | 0.0816419577 |
| GSE28863_A2 | Up | 0.0979672497 |
| GSE28863_A3 | Up | 0.1604154587 |
| GSE28863_A4 | Up | 0.0229363433 |
| GSE48662 | Up | 0.4019072466 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT019208 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-340-5p | MIMAT0004692 | MIRT019636 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-181a-5p | MIMAT0000256 | MIRT025128 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026901 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-19b-3p | MIMAT0000074 | MIRT031292 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-421 | MIMAT0003339 | MIRT039378 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-320a | MIMAT0000510 | MIRT044547 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-21-5p | MIMAT0000076 | MIRT050474 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
