HCSGD entry for KHDRBS2
1. General information
| Official gene symbol | KHDRBS2 |
|---|---|
| Entrez ID | 202559 |
| Gene full name | KH domain containing, RNA binding, signal transduction associated 2 |
| Other gene symbols | SLM-1 SLM1 bA535F17.1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0008143 | Poly(A) binding | IEA | molecular_function |
| GO:0008266 | Poly(U) RNA binding | IEA | molecular_function |
| GO:0017124 | SH3 domain binding | IEA | molecular_function |
| GO:0042169 | SH2 domain binding | IEA | molecular_function |
| GO:0046982 | Protein heterodimerization activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6504088181 | 0.8818535922 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0337175948 |
| GSE13712_SHEAR | Down | -0.1341126286 |
| GSE13712_STATIC | Down | -0.0637046632 |
| GSE19018 | Up | 0.0246472509 |
| GSE19899_A1 | Up | 0.2676061479 |
| GSE19899_A2 | Up | 0.2721810438 |
| PubMed_21979375_A1 | Up | 0.1376499100 |
| PubMed_21979375_A2 | Up | 0.0290442092 |
| GSE35957 | Down | -0.0310528439 |
| GSE36640 | Down | -0.0094997924 |
| GSE54402 | Up | 0.0957149987 |
| GSE9593 | Up | 0.1726472783 |
| GSE43922 | Up | 0.0467520255 |
| GSE24585 | Down | -0.0601141088 |
| GSE37065 | Down | -0.0636554335 |
| GSE28863_A1 | Down | -0.0535882907 |
| GSE28863_A2 | Up | 0.0695743582 |
| GSE28863_A3 | Up | 0.0351102128 |
| GSE28863_A4 | Up | 0.0208011736 |
| GSE48662 | Down | -0.0133130463 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT018184 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-148b-3p | MIMAT0000759 | MIRT019320 | Microarray | Functional MTI (Weak) | 17612493 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
