HCSGD entry for PAPD4
1. General information
| Official gene symbol | PAPD4 |
|---|---|
| Entrez ID | 167153 |
| Gene full name | PAP associated domain containing 4 |
| Other gene symbols | GLD2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004652 | Polynucleotide adenylyltransferase activity | IDA | molecular_function |
| GO:0005524 | ATP binding | IEA | molecular_function |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0006397 | MRNA processing | IEA | biological_process |
| GO:0031380 | Nuclear RNA-directed RNA polymerase complex | IC | cellular_component |
| GO:0043631 | RNA polyadenylation | IDA | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
| GO:0071044 | Histone mRNA catabolic process | IMP | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8482923939 | 0.0665818016 | 0.9999902473 | 0.4868885032 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0394076926 |
| GSE13712_SHEAR | Up | 0.2608878574 |
| GSE13712_STATIC | Up | 0.2979531875 |
| GSE19018 | Down | -0.0842221521 |
| GSE19899_A1 | Down | -0.2336228989 |
| GSE19899_A2 | Down | -0.5540735927 |
| PubMed_21979375_A1 | Down | -0.2281754278 |
| PubMed_21979375_A2 | Down | -0.3943930329 |
| GSE35957 | Down | -0.3108643810 |
| GSE36640 | Down | -0.2414244656 |
| GSE54402 | Down | -0.0916357553 |
| GSE9593 | Down | -0.2623685889 |
| GSE43922 | Down | -0.1123983282 |
| GSE24585 | Up | 0.1245710344 |
| GSE37065 | Up | 0.1845877808 |
| GSE28863_A1 | Up | 0.4366697753 |
| GSE28863_A2 | Up | 0.3221120846 |
| GSE28863_A3 | Down | -0.5258321079 |
| GSE28863_A4 | Down | -0.3646637972 |
| GSE48662 | Down | -0.5418905532 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-374b-5p | MIMAT0004955 | MIRT016072 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-590-3p | MIMAT0004801 | MIRT016207 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-375 | MIMAT0000728 | MIRT019783 | Microarray | Functional MTI (Weak) | 20215506 |
| hsa-miR-130b-3p | MIMAT0000691 | MIRT020225 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-148a-3p | MIMAT0000243 | MIRT025987 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-19b-3p | MIMAT0000074 | MIRT031176 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT040117 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7e-5p | MIMAT0000066 | MIRT051543 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
