HCSGD entry for ZNF540
1. General information
| Official gene symbol | ZNF540 |
|---|---|
| Entrez ID | 163255 |
| Gene full name | zinc finger protein 540 |
| Other gene symbols | Nbla10512 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000900 | Translation repressor activity, nucleic acid binding | IMP | molecular_function |
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005622 | Intracellular | IEA | cellular_component |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0017148 | Negative regulation of translation | IMP | biological_process |
| GO:0045892 | Negative regulation of transcription, DNA-templated | IDA | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6924521181 | 0.8835185973 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1383552660 |
| GSE13712_SHEAR | Down | -0.0907050057 |
| GSE13712_STATIC | Down | -0.1073980768 |
| GSE19018 | Down | -0.0004735122 |
| GSE19899_A1 | Down | -0.1338314744 |
| GSE19899_A2 | Up | 0.0384069782 |
| PubMed_21979375_A1 | Down | -0.0263022870 |
| PubMed_21979375_A2 | Down | -0.0183799589 |
| GSE35957 | Up | 0.0453391205 |
| GSE36640 | Up | 0.2550803679 |
| GSE54402 | Down | -0.1205671790 |
| GSE9593 | Up | 0.0588255267 |
| GSE43922 | Up | 0.0762372555 |
| GSE24585 | Up | 0.3203719532 |
| GSE37065 | Up | 0.0259991637 |
| GSE28863_A1 | - | - |
| GSE28863_A2 | - | - |
| GSE28863_A3 | - | - |
| GSE28863_A4 | - | - |
| GSE48662 | Up | 0.0737783947 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-375 | MIMAT0000728 | MIRT019918 | Microarray | Functional MTI (Weak) | 20215506 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
