HCSGD entry for TMTC2
1. General information
| Official gene symbol | TMTC2 |
|---|---|
| Entrez ID | 160335 |
| Gene full name | transmembrane and tetratricopeptide repeat containing 2 |
| Other gene symbols | IBDBP1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005783 | Endoplasmic reticulum | IDA | cellular_component |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0625929676 | 0.1937206147 | 0.5407344601 | 0.8531013385 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.6832587249 |
| GSE13712_SHEAR | Up | 0.2917262326 |
| GSE13712_STATIC | Up | 0.2115690610 |
| GSE19018 | Down | -2.2183918997 |
| GSE19899_A1 | Up | 0.0583884978 |
| GSE19899_A2 | Up | 0.3862858263 |
| PubMed_21979375_A1 | Up | 0.7904203957 |
| PubMed_21979375_A2 | Up | 0.6513233007 |
| GSE35957 | Down | -0.2873718786 |
| GSE36640 | Down | -0.0400728690 |
| GSE54402 | Down | -0.0454171411 |
| GSE9593 | Down | -0.1244313533 |
| GSE43922 | Up | 0.3120832693 |
| GSE24585 | Down | -0.2835675476 |
| GSE37065 | Down | -0.0126919717 |
| GSE28863_A1 | Up | 1.2789051446 |
| GSE28863_A2 | Up | 0.6468063038 |
| GSE28863_A3 | Up | 0.2391929501 |
| GSE28863_A4 | Down | -0.1552125484 |
| GSE48662 | Down | -0.1915666741 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT019093 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT023168 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-215-5p | MIMAT0000272 | MIRT024810 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026937 | Microarray | Functional MTI (Weak) | 19074876 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
