HCSGD entry for SNRNP48
1. General information
| Official gene symbol | SNRNP48 |
|---|---|
| Entrez ID | 154007 |
| Gene full name | small nuclear ribonucleoprotein 48kDa (U11/U12) |
| Other gene symbols | C6orf151 dJ336K20B.1 dJ512B11.2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005689 | U12-type spliceosomal complex | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0006397 | MRNA processing | IEA | biological_process |
| GO:0008380 | RNA splicing | IC | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8141906387 | 0.1248560237 | 0.9999902473 | 0.6785743134 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1715099140 |
| GSE13712_SHEAR | Down | -0.3169080462 |
| GSE13712_STATIC | Down | -0.7083636338 |
| GSE19018 | Up | 0.0368540167 |
| GSE19899_A1 | Up | 0.2300793648 |
| GSE19899_A2 | Down | -0.1994425318 |
| PubMed_21979375_A1 | Up | 0.4322925714 |
| PubMed_21979375_A2 | Down | -0.1382128682 |
| GSE35957 | Down | -0.4070233102 |
| GSE36640 | Down | -0.3177757384 |
| GSE54402 | Up | 0.0559622128 |
| GSE9593 | Down | -0.3616725379 |
| GSE43922 | Up | 0.1438591546 |
| GSE24585 | Down | -0.4547844384 |
| GSE37065 | Down | -0.0168833231 |
| GSE28863_A1 | Down | -0.1254462237 |
| GSE28863_A2 | Up | 0.1448617614 |
| GSE28863_A3 | Down | -0.2208677157 |
| GSE28863_A4 | Down | -0.0966238208 |
| GSE48662 | Up | 0.0196675602 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-21-5p | MIMAT0000076 | MIRT030727 | Microarray | Functional MTI (Weak) | 18591254 |
| hsa-miR-320a | MIMAT0000510 | MIRT044542 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
