HCSGD entry for RNF38
1. General information
| Official gene symbol | RNF38 |
|---|---|
| Entrez ID | 152006 |
| Gene full name | ring finger protein 38 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0008584 | Male gonad development | IEA | biological_process |
| GO:0036126 | Sperm flagellum | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8979389005 | 0.0510534820 | 0.9999902473 | 0.4249774510 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.3373026983 |
| GSE13712_SHEAR | Up | 0.1266424585 |
| GSE13712_STATIC | Up | 0.0854242626 |
| GSE19018 | Up | 0.1562308604 |
| GSE19899_A1 | Down | -0.4348350922 |
| GSE19899_A2 | Down | -0.4106628954 |
| PubMed_21979375_A1 | Up | 0.1061824005 |
| PubMed_21979375_A2 | Down | -0.1427620287 |
| GSE35957 | Up | 0.1734373807 |
| GSE36640 | Down | -0.1006873162 |
| GSE54402 | Down | -0.7879440544 |
| GSE9593 | Up | 0.1648877806 |
| GSE43922 | Down | -0.5792132975 |
| GSE24585 | Up | 0.4090071315 |
| GSE37065 | Up | 0.1071487664 |
| GSE28863_A1 | Down | -0.4208086415 |
| GSE28863_A2 | Down | -0.1483234501 |
| GSE28863_A3 | Down | -0.4015463335 |
| GSE28863_A4 | Down | -0.0039906841 |
| GSE48662 | Up | 0.0490742030 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT019005 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-218-5p | MIMAT0000275 | MIRT024218 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-7-5p | MIMAT0000252 | MIRT025963 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT030207 | Microarray | Functional MTI (Weak) | 19088304 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
