HCSGD entry for ZNF558
1. General information
| Official gene symbol | ZNF558 |
|---|---|
| Entrez ID | 148156 |
| Gene full name | zinc finger protein 558 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0005575 | Cellular_component | ND | cellular_component |
| GO:0005622 | Intracellular | IEA | cellular_component |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0008150 | Biological_process | ND | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8424595722 | 0.0446280650 | 0.9999902473 | 0.3976490521 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1608664555 |
| GSE13712_SHEAR | Down | -0.6471944378 |
| GSE13712_STATIC | Down | -0.3731221922 |
| GSE19018 | Down | -0.6475935564 |
| GSE19899_A1 | Up | 0.0077181898 |
| GSE19899_A2 | Down | -0.5745259779 |
| PubMed_21979375_A1 | Up | 0.0574053644 |
| PubMed_21979375_A2 | Up | 0.3821514484 |
| GSE35957 | Down | -0.3540866843 |
| GSE36640 | Down | -0.1305694390 |
| GSE54402 | Up | 0.3284766372 |
| GSE9593 | Down | -0.1281982051 |
| GSE43922 | Down | -0.0854803846 |
| GSE24585 | Up | 0.1465708945 |
| GSE37065 | Up | 0.1898628608 |
| GSE28863_A1 | Down | -0.1210372577 |
| GSE28863_A2 | Down | -0.3324314204 |
| GSE28863_A3 | Down | -0.8540698127 |
| GSE28863_A4 | Down | -0.1017566507 |
| GSE48662 | Up | 0.0047486435 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT017695 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-181a-5p | MIMAT0000256 | MIRT025046 | Microarray | Functional MTI (Weak) | 17612493 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
