HCSGD entry for VTI1A
1. General information
| Official gene symbol | VTI1A |
|---|---|
| Entrez ID | 143187 |
| Gene full name | vesicle transport through interaction with t-SNAREs 1A |
| Other gene symbols | MVti1 VTI1RP2 Vti1-rp2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | IEA | cellular_component |
| GO:0005484 | SNAP receptor activity | IDA | molecular_function |
| GO:0005794 | Golgi apparatus | IDA | cellular_component |
| GO:0006886 | Intracellular protein transport | IEA | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0016023 | Cytoplasmic membrane-bounded vesicle | IEA | cellular_component |
| GO:0031201 | SNARE complex | TAS | cellular_component |
| GO:0042147 | Retrograde transport, endosome to Golgi | IDA IMP | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.5952439269 | 0.8536388397 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1165607031 |
| GSE13712_SHEAR | Up | 0.1830103686 |
| GSE13712_STATIC | Up | 0.0887566079 |
| GSE19018 | Down | -0.1068298475 |
| GSE19899_A1 | Down | -0.0383185930 |
| GSE19899_A2 | Up | 0.0876719656 |
| PubMed_21979375_A1 | Up | 0.6390087889 |
| PubMed_21979375_A2 | Up | 0.0067797692 |
| GSE35957 | Down | -0.0534806003 |
| GSE36640 | Down | -0.1751108062 |
| GSE54402 | Up | 0.2229190164 |
| GSE9593 | Up | 0.0841075846 |
| GSE43922 | Up | 0.0452142562 |
| GSE24585 | Down | -0.0950972624 |
| GSE37065 | Up | 0.0425068108 |
| GSE28863_A1 | Up | 0.0971173353 |
| GSE28863_A2 | Up | 0.0586629174 |
| GSE28863_A3 | Down | -0.2398532225 |
| GSE28863_A4 | Down | -0.0122943498 |
| GSE48662 | Down | -0.1751902863 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-18a-3p | MIMAT0002891 | MIRT040753 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-18b-5p | MIMAT0001412 | MIRT042407 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
