HCSGD entry for TRUB1

1. General information

Official gene symbolTRUB1
Entrez ID142940
Gene full nameTruB pseudouridine (psi) synthase homolog 1 (E. coli)
Other gene symbolsPUS4
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in PPI subnetwork.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0001522Pseudouridine synthesisIEAbiological_process
GO:0003723RNA bindingIEAmolecular_function
GO:0008033TRNA processingIEAbiological_process
GO:0009982Pseudouridine synthase activityIEAmolecular_function
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.91324901030.23942782570.99999024730.9421407983

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.0277235458
GSE13712_SHEARUp0.0650369046
GSE13712_STATICUp0.0698799798
GSE19018Down-0.0839156871
GSE19899_A1Down-0.1647205551
GSE19899_A2Down-0.2040554904
PubMed_21979375_A1Up0.1702506600
PubMed_21979375_A2Down-0.2492112697
GSE35957Up0.1007907237
GSE36640Up0.1265580832
GSE54402Down-0.1196077674
GSE9593Up0.0483150062
GSE43922Up0.0024626906
GSE24585Down-0.1739490952
GSE37065Down-0.1675774284
GSE28863_A1Down-0.3691025476
GSE28863_A2Up0.0496424822
GSE28863_A3Down-0.4732341489
GSE28863_A4Up0.2522000455
GSE48662Up0.0968627160

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

    • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-17-5pMIMAT0000070MIRT050885CLASHFunctional MTI (Weak)23622248
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    • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.