HCSGD entry for RAB40A
1. General information
| Official gene symbol | RAB40A |
|---|---|
| Entrez ID | 142684 |
| Gene full name | RAB40A, member RAS oncogene family |
| Other gene symbols | RAR2 RAR2A |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005525 | GTP binding | IEA | molecular_function |
| GO:0005886 | Plasma membrane | IEA | cellular_component |
| GO:0007264 | Small GTPase mediated signal transduction | IEA | biological_process |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0016567 | Protein ubiquitination | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4023052886 | 0.7930480225 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0044419978 |
| GSE13712_SHEAR | Down | -0.0199980875 |
| GSE13712_STATIC | Down | -0.1284523190 |
| GSE19018 | Up | 0.1138209244 |
| GSE19899_A1 | Down | -0.0166660562 |
| GSE19899_A2 | Up | 0.2668112062 |
| PubMed_21979375_A1 | Up | 0.3396553800 |
| PubMed_21979375_A2 | Down | -0.3332063548 |
| GSE35957 | Up | 0.0647338796 |
| GSE36640 | Up | 0.1270366625 |
| GSE54402 | Up | 0.3085285141 |
| GSE9593 | Down | -0.0458512028 |
| GSE43922 | Up | 0.0394791925 |
| GSE24585 | Up | 0.0999900682 |
| GSE37065 | Up | 0.0226352138 |
| GSE28863_A1 | Up | 0.0264929811 |
| GSE28863_A2 | Down | -0.0504202388 |
| GSE28863_A3 | Up | 0.3991645254 |
| GSE28863_A4 | Down | -0.1103046873 |
| GSE48662 | - | - |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT017532 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
