HCSGD entry for SMCR8
1. General information
| Official gene symbol | SMCR8 |
|---|---|
| Entrez ID | 140775 |
| Gene full name | Smith-Magenis syndrome chromosome region, candidate 8 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0105968428 | 0.9905635842 | 0.2615521536 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2660466313 |
| GSE13712_SHEAR | Up | 0.4108043039 |
| GSE13712_STATIC | Up | 0.2661466887 |
| GSE19018 | Down | -0.0593557066 |
| GSE19899_A1 | Up | 0.4103502011 |
| GSE19899_A2 | Up | 0.6474972560 |
| PubMed_21979375_A1 | Up | 0.6722270738 |
| PubMed_21979375_A2 | Up | 0.7341302979 |
| GSE35957 | Up | 0.0692698880 |
| GSE36640 | Up | 0.0922746809 |
| GSE54402 | Up | 0.5123980625 |
| GSE9593 | Up | 0.3099779763 |
| GSE43922 | Up | 0.3683117235 |
| GSE24585 | Up | 0.0975977624 |
| GSE37065 | Up | 0.1500063082 |
| GSE28863_A1 | Up | 0.6608536109 |
| GSE28863_A2 | Up | 0.5105067445 |
| GSE28863_A3 | Down | -0.5661502231 |
| GSE28863_A4 | Up | 0.0933556029 |
| GSE48662 | Down | -0.0264337834 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-130b-3p | MIMAT0000691 | MIRT020110 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-19b-3p | MIMAT0000074 | MIRT031096 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-149-5p | MIMAT0000450 | MIRT045598 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
