HCSGD entry for PTPDC1
1. General information
| Official gene symbol | PTPDC1 |
|---|---|
| Entrez ID | 138639 |
| Gene full name | protein tyrosine phosphatase domain containing 1 |
| Other gene symbols | PTP9Q22 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004725 | Protein tyrosine phosphatase activity | IEA | molecular_function |
| GO:0005929 | Cilium | IEA | cellular_component |
| GO:0008138 | Protein tyrosine/serine/threonine phosphatase activity | IEA | molecular_function |
| GO:0060271 | Cilium morphogenesis | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0355016375 | 0.8941543482 | 0.4292322462 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0991368230 |
| GSE13712_SHEAR | Up | 0.4751766094 |
| GSE13712_STATIC | Up | 0.4818704852 |
| GSE19018 | Up | 0.3530127307 |
| GSE19899_A1 | Up | 0.0250024567 |
| GSE19899_A2 | Up | 0.0855130029 |
| PubMed_21979375_A1 | Up | 0.9198216332 |
| PubMed_21979375_A2 | Up | 0.1427985680 |
| GSE35957 | Down | -0.5829184278 |
| GSE36640 | Down | -0.2629632955 |
| GSE54402 | Up | 0.0295482322 |
| GSE9593 | Up | 0.0130814531 |
| GSE43922 | Up | 0.0775119596 |
| GSE24585 | Up | 0.9635491730 |
| GSE37065 | Down | -0.0449445654 |
| GSE28863_A1 | Up | 0.3954282841 |
| GSE28863_A2 | Up | 0.4502933235 |
| GSE28863_A3 | Up | 0.0982139058 |
| GSE28863_A4 | Up | 0.0567828262 |
| GSE48662 | Down | -0.0870989543 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-340-5p | MIMAT0004692 | MIRT019589 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-21-5p | MIMAT0000076 | MIRT031061 | Microarray | Functional MTI (Weak) | 18591254 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT032059 | Sequencing | Functional MTI (Weak) | 20371350 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
