HCSGD entry for COL6A6
1. General information
| Official gene symbol | COL6A6 |
|---|---|
| Entrez ID | 131873 |
| Gene full name | collagen, type VI, alpha 6 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005576 | Extracellular region | TAS | cellular_component |
| GO:0005581 | Collagen | IEA | cellular_component |
| GO:0007155 | Cell adhesion | IEA | biological_process |
| GO:0022617 | Extracellular matrix disassembly | TAS | biological_process |
| GO:0030198 | Extracellular matrix organization | TAS | biological_process |
| GO:0030574 | Collagen catabolic process | TAS | biological_process |
| GO:0031012 | Extracellular matrix | IDA | cellular_component |
Entries Per Page
Displaying Page of
4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9157597888 | 0.7455984917 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0441682591 |
| GSE13712_SHEAR | Down | -0.0515941841 |
| GSE13712_STATIC | Down | -0.0824199556 |
| GSE19018 | Up | 0.0191794167 |
| GSE19899_A1 | Up | 0.0173164973 |
| GSE19899_A2 | Up | 0.0602910373 |
| PubMed_21979375_A1 | Down | -0.0213715024 |
| PubMed_21979375_A2 | Down | -0.0805596542 |
| GSE35957 | Up | 0.1586142763 |
| GSE36640 | Down | -0.1333429405 |
| GSE54402 | Down | -0.0031714762 |
| GSE9593 | Down | -0.0339194765 |
| GSE43922 | Up | 0.0171412734 |
| GSE24585 | Up | 0.0186966692 |
| GSE37065 | Down | -0.0020090485 |
| GSE28863_A1 | - | - |
| GSE28863_A2 | - | - |
| GSE28863_A3 | - | - |
| GSE28863_A4 | - | - |
| GSE48662 | Down | -0.0055816012 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT018435 | Microarray | Functional MTI (Weak) | 18185580 |
Entries Per Page
Displaying Page of
- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
