HCSGD entry for COL9A3
1. General information
| Official gene symbol | COL9A3 |
|---|---|
| Entrez ID | 1299 |
| Gene full name | collagen, type IX, alpha 3 |
| Other gene symbols | DJ885L7.4.1 EDM3 IDD MED |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005576 | Extracellular region | TAS | cellular_component |
| GO:0005594 | Collagen type IX | IDA | cellular_component |
| GO:0005788 | Endoplasmic reticulum lumen | TAS | cellular_component |
| GO:0007411 | Axon guidance | TAS | biological_process |
| GO:0008584 | Male gonad development | IEA | biological_process |
| GO:0008585 | Female gonad development | IEA | biological_process |
| GO:0022617 | Extracellular matrix disassembly | TAS | biological_process |
| GO:0030020 | Extracellular matrix structural constituent conferring tensile strength | IC | molecular_function |
| GO:0030198 | Extracellular matrix organization | TAS | biological_process |
| GO:0030574 | Collagen catabolic process | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7639315224 | 0.2386921318 | 0.9999902473 | 0.9398078684 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1878705939 |
| GSE13712_SHEAR | Down | -0.7285660969 |
| GSE13712_STATIC | Up | 0.0461752982 |
| GSE19018 | Down | -0.0902846915 |
| GSE19899_A1 | Down | -0.0091824582 |
| GSE19899_A2 | Down | -0.1841997568 |
| PubMed_21979375_A1 | Down | -0.2629993056 |
| PubMed_21979375_A2 | Down | -0.0475862104 |
| GSE35957 | Up | 0.0094377064 |
| GSE36640 | Down | -1.0111722698 |
| GSE54402 | Down | -0.1091944219 |
| GSE9593 | Down | -0.0040627381 |
| GSE43922 | Up | 0.1712732819 |
| GSE24585 | Up | 0.3036897098 |
| GSE37065 | Down | -0.1370086340 |
| GSE28863_A1 | Down | -0.1942024910 |
| GSE28863_A2 | Down | -0.1330365602 |
| GSE28863_A3 | Up | 0.3796403950 |
| GSE28863_A4 | Up | 0.2019267731 |
| GSE48662 | Down | -0.0444474525 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT018445 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
