HCSGD entry for COL6A3
1. General information
| Official gene symbol | COL6A3 |
|---|---|
| Entrez ID | 1293 |
| Gene full name | collagen, type VI, alpha 3 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004867 | Serine-type endopeptidase inhibitor activity | IEA | molecular_function |
| GO:0005576 | Extracellular region | TAS | cellular_component |
| GO:0005589 | Collagen type VI | TAS | cellular_component |
| GO:0005615 | Extracellular space | IDA | cellular_component |
| GO:0005788 | Endoplasmic reticulum lumen | TAS | cellular_component |
| GO:0007155 | Cell adhesion | IEA | biological_process |
| GO:0007411 | Axon guidance | TAS | biological_process |
| GO:0007517 | Muscle organ development | TAS | biological_process |
| GO:0022617 | Extracellular matrix disassembly | TAS | biological_process |
| GO:0030198 | Extracellular matrix organization | TAS | biological_process |
| GO:0030574 | Collagen catabolic process | TAS | biological_process |
| GO:0031012 | Extracellular matrix | IDA ISS | cellular_component |
| GO:0042383 | Sarcolemma | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2363348163 | 0.0426301014 | 0.9200663659 | 0.3881644760 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.4202655978 |
| GSE13712_SHEAR | Up | 0.0696408333 |
| GSE13712_STATIC | Up | 0.1740394396 |
| GSE19018 | Up | 0.1522459653 |
| GSE19899_A1 | Up | 0.0323157470 |
| GSE19899_A2 | Down | -0.4756234650 |
| PubMed_21979375_A1 | Down | -0.8877070157 |
| PubMed_21979375_A2 | Down | -0.3312356313 |
| GSE35957 | Down | -0.9001101769 |
| GSE36640 | Down | -0.4237629896 |
| GSE54402 | Down | -0.3238790468 |
| GSE9593 | Up | 0.1205291555 |
| GSE43922 | Down | -0.0544031693 |
| GSE24585 | Up | 0.0380495826 |
| GSE37065 | Down | -0.5757897578 |
| GSE28863_A1 | Up | 1.6059777934 |
| GSE28863_A2 | Up | 1.9021866920 |
| GSE28863_A3 | Up | 0.1056687702 |
| GSE28863_A4 | Down | -0.2310328805 |
| GSE48662 | Down | -0.2113555343 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirTarBase
- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
