HCSGD entry for COL5A2

1. General information

Official gene symbolCOL5A2
Entrez ID1290
Gene full namecollagen, type V, alpha 2
Other gene symbols
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in PPI subnetwork.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0001501Skeletal system developmentIEAbiological_process
GO:0003674Molecular_functionNDmolecular_function
GO:0005201Extracellular matrix structural constituentIEAmolecular_function
GO:0005576Extracellular regionTAScellular_component
GO:0005588Collagen type VIMPcellular_component
GO:0005788Endoplasmic reticulum lumenTAScellular_component
GO:0007411Axon guidanceTASbiological_process
GO:0022617Extracellular matrix disassemblyTASbiological_process
GO:0030198Extracellular matrix organizationTASbiological_process
GO:0030199Collagen fibril organizationIMP ISSbiological_process
GO:0030574Collagen catabolic processTASbiological_process
GO:0031012Extracellular matrixNAScellular_component
GO:0043588Skin developmentIMP ISSbiological_process
GO:0046332SMAD bindingIEAmolecular_function
GO:0046872Metal ion bindingIEAmolecular_function
GO:0048592Eye morphogenesisIMPbiological_process
GO:0071230Cellular response to amino acid stimulusIEAbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.44958503860.00122093770.99999024730.0663719588

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Down-0.6822420916
GSE13712_SHEARDown-0.1580475154
GSE13712_STATICUp0.2713928965
GSE19018Up0.0516015583
GSE19899_A1Down-2.1634693809
GSE19899_A2Down-2.3459742426
PubMed_21979375_A1Down-2.3553617208
PubMed_21979375_A2Down-1.7802638474
GSE35957Up0.0050447770
GSE36640Up0.2055723489
GSE54402Down-2.3285543240
GSE9593Down-0.1513890699
GSE43922Down-0.7495615475
GSE24585Up0.5330339609
GSE37065Down-0.8286645402
GSE28863_A1Up0.9893957203
GSE28863_A2Up0.9031378427
GSE28863_A3Up0.0715841477
GSE28863_A4Down-0.4224225570
GSE48662Down-0.0949017133

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

    • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-21-5pMIMAT0000076MIRT030666MicroarrayFunctional MTI (Weak)18591254
hsa-miR-222-3pMIMAT0000279MIRT046753CLASHFunctional MTI (Weak)23622248
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    • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.