HCSGD entry for COL5A1

1. General information

Official gene symbolCOL5A1
Entrez ID1289
Gene full namecollagen, type V, alpha 1
Other gene symbols
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

color bar
This gene isn't in PPI subnetwork.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0001568Blood vessel developmentIEAbiological_process
GO:0003007Heart morphogenesisIEAbiological_process
GO:0005178Integrin bindingNASmolecular_function
GO:0005201Extracellular matrix structural constituentIEAmolecular_function
GO:0005576Extracellular regionTAScellular_component
GO:0005581CollagenIEAcellular_component
GO:0005588Collagen type VIMPcellular_component
GO:0005604Basement membraneIEAcellular_component
GO:0005788Endoplasmic reticulum lumenTAScellular_component
GO:0007155Cell adhesionIMPbiological_process
GO:0007411Axon guidanceTASbiological_process
GO:0008201Heparin bindingIDAmolecular_function
GO:0016477Cell migrationIMPbiological_process
GO:0022617Extracellular matrix disassemblyTASbiological_process
GO:0030198Extracellular matrix organizationTASbiological_process
GO:0030199Collagen fibril organizationIMP NASbiological_process
GO:0030574Collagen catabolic processTASbiological_process
GO:0031012Extracellular matrixIDA IMPcellular_component
GO:0032964Collagen biosynthetic processIMPbiological_process
GO:0035313Wound healing, spreading of epidermal cellsIMPbiological_process
GO:0035989Tendon developmentIEAbiological_process
GO:0043206Extracellular fibril organizationIMPbiological_process
GO:0043394Proteoglycan bindingIPImolecular_function
GO:0043588Skin developmentIMPbiological_process
GO:0045112Integrin biosynthetic processIMPbiological_process
GO:0046872Metal ion bindingIEAmolecular_function
GO:0048407Platelet-derived growth factor bindingIDAmolecular_function
GO:0048592Eye morphogenesisIMPbiological_process
GO:0051128Regulation of cellular component organizationIEAbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.80344143840.00111539460.99999024730.0634088553

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Down-2.5105249520
GSE13712_SHEARDown-0.4200373170
GSE13712_STATICDown-0.4196112424
GSE19018Up0.0237426760
GSE19899_A1Down-1.6176532382
GSE19899_A2Down-2.3876115504
PubMed_21979375_A1Down-1.8458918469
PubMed_21979375_A2Down-1.8805125630
GSE35957Down-0.2837421778
GSE36640Up0.1386495880
GSE54402Down-1.4461251138
GSE9593Down-0.1867777947
GSE43922Down-0.0529943215
GSE24585Up0.2545865308
GSE37065Down-0.8815891286
GSE28863_A1Up0.2664965991
GSE28863_A2Up0.2411972550
GSE28863_A3Up0.5145660884
GSE28863_A4Down-0.0550521531
GSE48662Up0.1620577062

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

    • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-26b-5pMIMAT0000083MIRT029467MicroarrayFunctional MTI (Weak)19088304
hsa-miR-744-5pMIMAT0004945MIRT037642CLASHFunctional MTI (Weak)23622248
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    • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.